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EGLN3-AS1 EGLN3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105370445, updated on 10-Oct-2023

Summary

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Official Symbol
EGLN3-AS1provided by HGNC
Official Full Name
EGLN3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:49077
See related
AllianceGenome:HGNC:49077
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
14q13.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (34039981..34062362)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (28237772..28260647)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr14:34400622-34401183 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:34407170-34408141 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8243 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5660 Neighboring gene uncharacterized LOC102724945 Neighboring gene uncharacterized LOC105370446 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:34433111-34433612 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8244 Neighboring gene egl-9 family hypoxia inducible factor 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8245 Neighboring gene Sharpr-MPRA regulatory region 12661 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr14:34512642-34513841 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8247 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:34529023-34529524 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8248 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8249 Neighboring gene uncharacterized LOC105370444 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:34608249-34609068 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:34609069-34609887 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8250 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8251 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8252 Neighboring gene sulfotransferase family 1C member 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and analysis of 280,000 human expressed sequence tags. Hillier LD, et al. Genome Res, 1996 Sep. PMID 8889549

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184209.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL358340

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    34039981..34062362
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    28237772..28260647
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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