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SEC23A-AS1 SEC23A antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105370458, updated on 10-Oct-2023

Summary

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Official Symbol
SEC23A-AS1provided by HGNC
Official Full Name
SEC23A antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:53213
See related
Ensembl:ENSG00000258651 AllianceGenome:HGNC:53213
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in duodenum (RPKM 3.6), urinary bladder (RPKM 2.4) and 25 other tissues See more
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Genomic context

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See SEC23A-AS1 in Genome Data Viewer
Location:
14q21.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (39103140..39103812)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (33291817..33292489)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (39572344..39573016)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 639 Neighboring gene uncharacterized LOC105370457 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:39401304-39402503 Neighboring gene uncharacterized LOC102723516 Neighboring gene RIPPLY3 pseudogene 1 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:39486106-39486616 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:39486617-39487127 Neighboring gene Sharpr-MPRA regulatory region 2779 Neighboring gene SEC23 homolog A, COPII coat complex component Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5684 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5685 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5686 Neighboring gene uncharacterized LOC105370459 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:39579989-39580506 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8285 Neighboring gene peptidylprolyl isomerase A pseudogene 4 Neighboring gene gem nuclear organelle associated protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146545.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL109628
    Related
    ENST00000557350.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    39103140..39103812
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    33291817..33292489
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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