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LINC02290 long intergenic non-protein coding RNA 2290 [ Homo sapiens (human) ]

Gene ID: 105370540, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02290provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2290provided by HGNC
Primary source
HGNC:HGNC:53206
See related
Ensembl:ENSG00000258502 AllianceGenome:HGNC:53206
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02290 in Genome Data Viewer
Location:
14q23.3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (66111631..66128830)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (60318617..60335816)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:66395716-66396253 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:66424074-66424624 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:66424625-66425174 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:66481099-66482298 Neighboring gene ferritin heavy chain 1 pseudogene 13 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:66559679-66560179 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_35366 Neighboring gene MPRA-validated peak2176 silencer Neighboring gene Y-box binding protein 1 pseudogene 1 Neighboring gene MPRA-validated peak2177 silencer Neighboring gene Neanderthal introgressed variant-containing enhancers experimental_35463 and experimental_35465 Neighboring gene Sharpr-MPRA regulatory region 5211 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_35483 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_35504 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_35506 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_35524 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5853 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5854 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8568 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8569 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_35661 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8570 Neighboring gene coiled-coil domain containing 196 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8571 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8572 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8573 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8574 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_35749 Neighboring gene gephyrin Neighboring gene MPRA-validated peak2180 silencer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_35767 Neighboring gene uncharacterized LOC124903332

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184236.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356021

  2. NR_184237.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356021
    Related
    ENST00000667302.1

  3. NR_184238.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356021
    Related
    ENST00000671168.1

  4. NR_184239.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356021
    Related
    ENST00000671226.1

  5. NR_184240.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356021
    Related
    ENST00000667482.1

  6. NR_184241.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356021
    Related
    ENST00000661737.1

  7. NR_184242.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356021
    Related
    ENST00000655653.1

  8. NR_184243.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356021
    Related
    ENST00000670103.1

  9. NR_184244.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356021

  10. NR_184245.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356021

  11. NR_184246.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356021

  12. NR_184247.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356021
    Related
    ENST00000653964.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    66111631..66128830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    60318617..60335816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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