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LINC02296 long intergenic non-protein coding RNA 2296 [ Homo sapiens (human) ]

Gene ID: 105370610, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02296provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2296provided by HGNC
Primary source
HGNC:HGNC:53212
See related
AllianceGenome:HGNC:53212
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02296 in Genome Data Viewer
Location:
14q31.3
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (87344646..87613463, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (81565728..81834076, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1148 Neighboring gene NANOG hESC enhancer GRCh37_chr14:87475731-87476275 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:87483369-87484231 Neighboring gene NANOG hESC enhancer GRCh37_chr14:87486385-87486995 Neighboring gene uncharacterized LOC105370608 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr14:87599502-87600701 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:87621174-87621674 Neighboring gene NANOG hESC enhancer GRCh37_chr14:87623147-87623726 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:87636358-87637056 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:87652958-87653633 Neighboring gene NANOG hESC enhancer GRCh37_chr14:87701004-87701521 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:87706805-87707606 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:87726633-87727391 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr14:87809385-87810584 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:87896478-87897677 Neighboring gene long intergenic non-protein coding RNA 2330 Neighboring gene NANOG hESC enhancer GRCh37_chr14:88228569-88229110 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:88263144-88263835 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:88296681-88297225 Neighboring gene Sharpr-MPRA regulatory region 1922 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_38563 Neighboring gene shieldin complex subunit 2 pseudogene 2 Neighboring gene galactosylceramidase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    87344646..87613463 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007064294.1 RNA Sequence

  2. XR_007064293.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    81565728..81834076 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007084423.1 RNA Sequence

  2. XR_007084422.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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