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LOC105370622 uncharacterized LOC105370622 [ Homo sapiens (human) ]

Gene ID: 105370622, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105370622
Gene description
uncharacterized LOC105370622
See related
Ensembl:ENSG00000258716
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.5) See more
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Genomic context

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See LOC105370622 in Genome Data Viewer
Location:
14q32.11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (90697333..90699374)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (84922490..84924531)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (91163677..91165718)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370619 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:90984266-90985000 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:90985001-90985735 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:90989062-90989923 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:90999515-91000015 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:91000050-91000880 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91005194-91005707 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91005708-91006220 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:91012381-91012922 Neighboring gene tetratricopeptide repeat domain 7B Neighboring gene ReSE screen-validated silencer GRCh37_chr14:91020548-91020710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:91035910-91036410 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:91036411-91036911 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr14:91037691-91038890 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr14:91040724-91041597 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91081381-91081902 Neighboring gene Sharpr-MPRA regulatory region 13818 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91091763-91092395 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:91105894-91106408 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:91108217-91108821 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:91108822-91109426 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:91112734-91113933 Neighboring gene TTC7B antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:91148618-91149118 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:91187652-91188851 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6012 Neighboring gene uncharacterized LOC124903360 Neighboring gene ribosomal protein S18 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135190.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL139193
    Related
    ENST00000553712.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    90697333..90699374
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    84922490..84924531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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