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LINC00677 long intergenic non-protein coding RNA 677 [ Homo sapiens (human) ]

Gene ID: 105370683, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00677provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 677provided by HGNC
Primary source
HGNC:HGNC:20121
See related
Ensembl:ENSG00000259717 AllianceGenome:HGNC:20121
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C14orf74
Expression
Biased expression in testis (RPKM 1.2), spleen (RPKM 0.5) and 11 other tissues See more
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Genomic context

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Location:
14q32.32
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (103120849..103122909, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (97356765..97358825, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (103587186..103589246, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene LBH domain containing 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6142 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9094 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:103559931-103560500 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:103561071-103561640 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:103564684-103564853 Neighboring gene exocyst complex component 3 like 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:103570895-103571645 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9095 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6144 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:103576032-103576642 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:103576643-103577253 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9096 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:103588729-103589261 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:103589262-103589795 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6146 Neighboring gene TNF alpha induced protein 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:103594547-103595312 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:103598606-103599176 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:103599177-103599745 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:103601649-103602150 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9097 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9098 Neighboring gene NADH:ubiquinone oxidoreductase subunit B4 pseudogene 11 Neighboring gene ribosomal protein L21 pseudogene 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_138038.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL161669
    Related
    ENST00000558224.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    103120849..103122909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    97356765..97358825 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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