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LOC105370820 uncharacterized LOC105370820 [ Homo sapiens (human) ]

Gene ID: 105370820, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105370820
Gene description
uncharacterized LOC105370820
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105370820 in Genome Data Viewer
Location:
15q21.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (52221160..52237326)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (50029774..50045591)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9421 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9422 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6444 Neighboring gene BCL2 like 10 Neighboring gene G protein subunit beta 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9423 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_39709 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6445 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:52472339-52472840 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_39732 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:52483687-52484186 Neighboring gene competing endogenous lncRNA 1 for miR-4707-5p and miR-4767 Neighboring gene myosin VC Neighboring gene ReSE screen-validated silencer GRCh37_chr15:52521219-52521393 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:52549514-52550090 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:52552397-52552972 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr15:52578302-52579058 Neighboring gene microRNA 1266 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9425 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_39766 Neighboring gene uncharacterized LOC105370819 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6446

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    52221160..52237326
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007064638.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    50029774..50045591
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007085296.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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