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LOC105370829 uncharacterized LOC105370829 [ Homo sapiens (human) ]

Gene ID: 105370829, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105370829
Gene description
uncharacterized LOC105370829
See related
Ensembl:ENSG00000260937
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105370829 in Genome Data Viewer
Location:
15q21.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (55056747..55092173)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (52860264..52895682)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (55348945..55384371)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene unc-13 homolog C Neighboring gene intraflagellar transport 80 homolog (Chlamydomonas) pseudogene Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_39945 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_39975 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 74 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_40016 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_40047 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6452 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:54886172-54887371 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:54897116-54897693 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_40093 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_40111 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_40127 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_40125 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:55282569-55283080 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:55283081-55283592 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:55356487-55357068 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_40151 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:55435814-55435975 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:55488259-55489150 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9439 Neighboring gene Sharpr-MPRA regulatory region 6285 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6453 Neighboring gene ribosomal L24 domain containing 1 Neighboring gene RAB27A, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135679.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA625847, BX103808
    Related
    ENST00000569661.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    55056747..55092173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    52860264..52895682
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials