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LINC03065 long intergenic non-protein coding RNA 3065 [ Homo sapiens (human) ]

Gene ID: 105370833, updated on 28-Oct-2024

Summary

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Official Symbol
LINC03065provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3065provided by HGNC
Primary source
HGNC:HGNC:56373
See related
Ensembl:ENSG00000276524 AllianceGenome:HGNC:56373
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC03065 in Genome Data Viewer
Location:
15q21.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (56887068..56888221)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (54690281..54691432)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (57179266..57180419)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 280D Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_40335 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9456 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6466 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_40373 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_40379 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_40384 Neighboring gene MPRA-validated peak2351 silencer Neighboring gene acyl-CoA binding domain containing 7 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9457 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6467 Neighboring gene NANOG hESC enhancer GRCh37_chr15:57184049-57184608 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6468 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6469 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6470 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6471 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6472 Neighboring gene TCF12 divergent transcript Neighboring gene ReSE screen-validated silencer GRCh37_chr15:57269446-57269630 Neighboring gene transcription factor 12 Neighboring gene VISTA enhancer hs357 Neighboring gene VISTA enhancer hs623 Neighboring gene MPRA-validated peak2352 silencer Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr15:57490067-57490736 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr15:57490737-57491406 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr15:57491407-57492076 Neighboring gene heterogeneous nuclear ribonucleoprotein A3 pseudogene 11 Neighboring gene small nucleolar RNA, C/D box 13D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Clone Names

  • AC010999.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183869.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010999, KF459798
    Related
    ENST00000621974.2

  2. NR_183870.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010999
    Related
    ENST00000832688.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    56887068..56888221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    54690281..54691432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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