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LOC105370834 uncharacterized LOC105370834 [ Homo sapiens (human) ]

Gene ID: 105370834, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105370834
Gene description
uncharacterized LOC105370834
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105370834 in Genome Data Viewer
Location:
15q21.3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (57732411..57782762)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (55534835..55585181)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene GCOM1, MYZAP-POLR2M combined locus Neighboring gene myocardial zonula adherens protein Neighboring gene uncharacterized LOC124903589 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9464 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6475 Neighboring gene RNA polymerase II subunit M Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:58043407-58044159 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:58044582-58045178 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6476 Neighboring gene Sharpr-MPRA regulatory region 1312 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9465 Neighboring gene calponin 2 pseudogene Neighboring gene aldehyde dehydrogenase 1 family member A2 Neighboring gene NANOG hESC enhancer GRCh37_chr15:58341834-58342511 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:58356927-58357446 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:58357447-58357966 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6477 Neighboring gene ALDH1A2 antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    57732411..57782762
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001751554.3 RNA Sequence

  2. XR_001751555.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    55534835..55585181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007085559.1 RNA Sequence

  2. XR_007085560.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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