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LOC105370838 uncharacterized LOC105370838 [ Homo sapiens (human) ]

Gene ID: 105370838, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105370838
Gene description
uncharacterized LOC105370838
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105370838 in Genome Data Viewer
Location:
15q22.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (60029691..60041899)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (57831377..57843603)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene NMNAT1 pseudogene 5 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:60287460-60288247 Neighboring gene NANOG hESC enhancer GRCh37_chr15:60296191-60296706 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9502 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9503 Neighboring gene Sharpr-MPRA regulatory region 13950 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:60301179-60301777 Neighboring gene forkhead box B1 Neighboring gene mesoderm specific transcript pseudogene 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:60410256-60410946 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr15:60411637-60412327 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:60412328-60413017 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9504 Neighboring gene NANOG hESC enhancer GRCh37_chr15:60420831-60421332 Neighboring gene uncharacterized LOC105370839

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    60029691..60041899
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_932307.2 RNA Sequence

  2. XR_932308.2 RNA Sequence

  3. XR_932309.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    57831377..57843603
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007085576.1 RNA Sequence

  2. XR_007085577.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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