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LINC02205 long intergenic non-protein coding RNA 2205 [ Homo sapiens (human) ]

Gene ID: 105370880, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02205provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2205provided by HGNC
Primary source
HGNC:HGNC:53071
See related
Ensembl:ENSG00000259473 AllianceGenome:HGNC:53071
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
15q23
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (70503907..70505928, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (68326452..68328473, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (70796246..70798267, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370878 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9683 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9684 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9685 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70593533-70594034 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70615294-70615813 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70636737-70637238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70654349-70654848 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70670319-70670820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70670821-70671320 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70687219-70687723 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70690391-70690891 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70698815-70699316 Neighboring gene uncharacterized LOC124903519 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70719956-70720463 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:70727798-70728001 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9686 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70752651-70753150 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9687 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9688 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9689 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9690 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9691 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9692 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70785141-70785685 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70795833-70796358 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:70796359-70796882 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9696 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9697 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70809116-70809692 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9698 Neighboring gene uncharacterized LOC107984781 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9699 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:70871773-70872576 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70877919-70878863 Neighboring gene long intergenic non-protein coding RNA 2204

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146562.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009434
    Related
    ENST00000559752.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    70503907..70505928 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    68326452..68328473 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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