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LINC02244 long intergenic non-protein coding RNA 2244 [ Homo sapiens (human) ]

Gene ID: 105371018, updated on 10-Oct-2023

Summary

Official Symbol
LINC02244provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2244provided by HGNC
Primary source
HGNC:HGNC:53929
See related
AllianceGenome:HGNC:53929
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
15q26.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (99394650..99402418, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (97158442..97166210, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene heat shock protein 90 beta family member 2, pseudogene Neighboring gene leucine rich repeat containing 28 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 62 Neighboring gene MPRA-validated peak2447 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10151 Neighboring gene uncharacterized LOC105371017 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99942299-99942818 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99942819-99943336 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99944293-99944794 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99949649-99950148 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6867 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:99973380-99974579 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99977262-99977931 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:99978603-99979271 Neighboring gene long intergenic non-protein coding RNA 3080 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10154 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:100006923-100007424 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:100014529-100015205 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:100015206-100015881 Neighboring gene Sharpr-MPRA regulatory region 6154 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6868 Neighboring gene uncharacterized LOC107984790

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187226.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC015660, AC037479

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    99394650..99402418 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    97158442..97166210 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)