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LOC105371543 uncharacterized LOC105371543 [ Homo sapiens (human) ]

Gene ID: 105371543, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105371543
Gene description
uncharacterized LOC105371543
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105371543 in Genome Data Viewer
Location:
17p12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (13351462..13387189, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (13260237..13294168, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904097 Neighboring gene long intergenic non-protein coding RNA 2093 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:13250372-13251571 Neighboring gene NANOG hESC enhancer GRCh37_chr17:13266032-13266533 Neighboring gene heparan sulfate-glucosamine 3-sulfotransferase 3A1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:13459681-13460196 Neighboring gene microRNA 548h-3 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:13478826-13479326 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:13479327-13479827 Neighboring gene MPRA-validated peak2737 silencer Neighboring gene MPRA-validated peak2739 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:13504200-13504820 Neighboring gene Sharpr-MPRA regulatory region 12003 Neighboring gene uncharacterized LOC105371544

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    13351462..13387189 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_934238.3 RNA Sequence

  2. XR_934236.3 RNA Sequence

  3. XR_007065624.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    13260237..13294168 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007087900.1 RNA Sequence

  2. XR_007087899.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Research Materials