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LOC105371552 uncharacterized LOC105371552 [ Homo sapiens (human) ]

Gene ID: 105371552, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105371552
Gene description
uncharacterized LOC105371552
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105371552 in Genome Data Viewer
Location:
17p11.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (16822427..16829837)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (16769732..16775753)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 32 pseudogene 1 Neighboring gene family with sequence similarity 106 member C Neighboring gene distal SMS-REP block A recombination region Neighboring gene nitric oxide synthase 2 pseudogene 4 Neighboring gene MPRA-validated peak2752 silencer Neighboring gene keratin 16 pseudogene 6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16734092-16734602 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16735814-16736326 Neighboring gene uncharacterized LOC105371551 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16737352-16737864 Neighboring gene keratin 16 pseudogene 2 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16738378-16738890 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16738891-16739402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16743553-16744102 Neighboring gene distal SMS-REP block C recombination region Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16748284-16749150 Neighboring gene keratin 17 pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16749151-16750015

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    16822427..16829837
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_934251.1 RNA Sequence

  2. XR_934250.3 RNA Sequence

  3. XR_934252.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    16769732..16775753
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007087630.1 RNA Sequence

  2. XR_007087631.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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