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LMX1A-AS2 LMX1A antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 105371561, updated on 10-Oct-2023

Summary

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Official Symbol
LMX1A-AS2provided by HGNC
Official Full Name
LMX1A antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:40343
See related
AllianceGenome:HGNC:40343
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.1) See more
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Genomic context

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Location:
1q23.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (165204047..165212923)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (164550431..164559284)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 755, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1497 Neighboring gene uncharacterized LOC107985452 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1498 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:165131828-165132328 Neighboring gene LMX1A antisense RNA 1 Neighboring gene LIM homeobox transcription factor 1 alpha Neighboring gene NANOG hESC enhancer GRCh37_chr1:165223074-165223646 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_852 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1499 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2015 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:165370087-165370588 Neighboring gene retinoid X receptor gamma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    165204047..165212923
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_922234.2 RNA Sequence

  2. XR_922233.3 RNA Sequence

  3. XR_001738275.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    164550431..164559284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070816.1 RNA Sequence

  2. XR_007070815.1 RNA Sequence

  3. XR_007070817.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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