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LOC105371956 uncharacterized LOC105371956 [ Homo sapiens (human) ]

Gene ID: 105371956, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105371956
Gene description
uncharacterized LOC105371956
See related
Ensembl:ENSG00000263745
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
18p11.32
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (2034200..2126377, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (2189099..2414201, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371958 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47754 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47822 Neighboring gene NANOG hESC enhancer GRCh37_chr18:1969063-1969621 Neighboring gene AIDA pseudogene 3 Neighboring gene uncharacterized LOC105371957 Neighboring gene NANOG hESC enhancer GRCh37_chr18:2082631-2083132 Neighboring gene Sharpr-MPRA regulatory region 5248 Neighboring gene MPRA-validated peak3043 silencer Neighboring gene uncharacterized LOC105371961 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr18:2350584-2351783 Neighboring gene MPRA-validated peak3044 silencer Neighboring gene MPRA-validated peak3045 silencer Neighboring gene uncharacterized LOC124904235

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    2034200..2126377 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_935087.3 RNA Sequence

    Related
    ENST00000659989.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    2189099..2414201 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088306.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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