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TCF4-AS1 TCF4 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105372127, updated on 10-Oct-2023

Summary

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Official Symbol
TCF4-AS1provided by HGNC
Official Full Name
TCF4 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:51642
See related
Ensembl:ENSG00000267028 AllianceGenome:HGNC:51642
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MIR4529HG
Expression
Low expression observed in reference dataset See more
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Genomic context

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See TCF4-AS1 in Genome Data Viewer
Location:
18q21.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (55452533..55482940)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (55655633..55686044)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (53119764..53150171)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1929 Neighboring gene RNA, 5S ribosomal pseudogene 459 Neighboring gene NANOG hESC enhancer GRCh37_chr18:52881645-52882231 Neighboring gene Sharpr-MPRA regulatory region 5538 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13352 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13353 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13354 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13355 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13356 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13357 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13358 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9473 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr18:52936433-52937632 Neighboring gene transcription factor 4 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9474 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr18:53017604-53018299 Neighboring gene VISTA enhancer hs1537 Neighboring gene VISTA enhancer hs376 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:53106079-53106856 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:53155630-53156322 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr18:53176779-53177297 Neighboring gene microRNA 4529 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:53249412-53250006 Neighboring gene transcription factor 4 repeat instability region Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13360 Neighboring gene uncharacterized LOC105372126 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:53295077-53295576 Neighboring gene ribosomal protein L21 pseudogene 126

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Other Names

  • MIR4529 host

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132985.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AW138360, BX110727
    Related
    ENST00000587660.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    55452533..55482940
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    55655633..55686044
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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