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LOC105372442 uncharacterized LOC105372442 [ Homo sapiens (human) ]

Gene ID: 105372442, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105372442
Gene description
uncharacterized LOC105372442
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in esophagus (RPKM 3.2), brain (RPKM 2.0) and 4 other tissues See more
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Genomic context

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See LOC105372442 in Genome Data Viewer
Location:
19q13.41
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (50950123..50974726)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (54038200..54063128)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene kallikrein related peptidase 4 Neighboring gene peptidylprolyl isomerase A pseudogene 59 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:51442294-51442457 Neighboring gene kallikrein related peptidase 5 Neighboring gene kallikrein related peptidase 6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:51486908-51487462 Neighboring gene kallikrein related peptidase 7 Neighboring gene MPRA-validated peak3546 silencer Neighboring gene Sharpr-MPRA regulatory region 5518 Neighboring gene kallikrein related peptidase 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

General gene information

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Other Names

  • CTB-147C22.9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    50950123..50974726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007067301.1 RNA Sequence

  2. XR_007067304.1 RNA Sequence

  3. XR_007067308.1 RNA Sequence

  4. XR_001753976.2 RNA Sequence

  5. XR_007067302.1 RNA Sequence

  6. XR_936036.1 RNA Sequence

  7. XR_007067303.1 RNA Sequence

  8. XR_007067305.1 RNA Sequence

  9. XR_007067306.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    54038200..54063128
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007089211.1 RNA Sequence

  2. XR_007089215.1 RNA Sequence

  3. XR_007089219.1 RNA Sequence

  4. XR_007089218.1 RNA Sequence

  5. XR_007089213.1 RNA Sequence

  6. XR_007089212.1 RNA Sequence

  7. XR_007089214.1 RNA Sequence

  8. XR_007089216.1 RNA Sequence

  9. XR_007089217.1 RNA Sequence

Nucleotide Protein
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