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LOC105372560 uncharacterized LOC105372560 [ Homo sapiens (human) ]

Gene ID: 105372560, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105372560
Gene description
uncharacterized LOC105372560
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105372560 in Genome Data Viewer
Location:
20p11.22
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (22217123..22223574)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (22274602..22281120)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ribosomal protein L41 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:21789824-21790630 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:21790631-21791436 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:21917369-21917960 Neighboring gene Xe1 enhancer downstream of PAX1 Neighboring gene PEC7 enhancer downstream of PAX1 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:21982513-21983712 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:21989996-21990496 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:22026257-22026923 Neighboring gene long intergenic non-protein coding RNA 1432 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:22219376-22219876 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:22219877-22220377 Neighboring gene Sharpr-MPRA regulatory region 10919 Neighboring gene uncharacterized LOC105372561 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:22245080-22246279 Neighboring gene long intergenic non-protein coding RNA 1427

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    22217123..22223574
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_937331.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    22274602..22281120
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007089465.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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