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LINC02967 long intergenic non-protein coding RNA 2967 [ Homo sapiens (human) ]

Gene ID: 105372578, updated on 28-Oct-2024

Summary

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Official Symbol
LINC02967provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2967provided by HGNC
Primary source
HGNC:HGNC:56007
See related
AllianceGenome:HGNC:56007
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in thyroid (RPKM 69.9), salivary gland (RPKM 15.3) and 11 other tissues See more
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Genomic context

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See LINC02967 in Genome Data Viewer
Location:
20p11.21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (24918564..24932985)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (24982692..24997100)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985402 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:24806238-24806412 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17647 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24849215-24849714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17648 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17649 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17650 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:24855486-24855986 Neighboring gene uncharacterized LOC124904881 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:24881363-24881542 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17651 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12737 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:24899137-24899770 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17652 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17653 Neighboring gene cystatin F Neighboring gene RNA, U6 small nuclear 1257, pseudogene Neighboring gene adipocyte plasma membrane associated protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Risk stratification by long non-coding RNAs profiling in COVID-19 patients. Cheng J, et al. J Cell Mol Med, 2021 May. PMID 33759345, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AL035661.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    24918564..24932985
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001754563.2 RNA Sequence

  2. XR_937399.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    24982692..24997100
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007089824.1 RNA Sequence

  2. XR_007089825.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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