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BCL2L1-AS1 BCL2L1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105372589, updated on 10-Oct-2023

Summary

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Official Symbol
BCL2L1-AS1provided by HGNC
Official Full Name
BCL2L1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40095
See related
AllianceGenome:HGNC:40095
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See BCL2L1-AS1 in Genome Data Viewer
Location:
20q11.21
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (31675108..31716844)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (33399365..33441456)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12759 Neighboring gene MPRA-validated peak4185 silencer Neighboring gene cytochrome c oxidase subunit 4I2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:30249151-30249878 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr20:30251554-30252384 Neighboring gene uncharacterized LOC124904883 Neighboring gene VISTA enhancer hs2050 Neighboring gene BCL2 like 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:30285857-30286804 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17690 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17691 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17692 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17693 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:30300575-30301102 Neighboring gene Sharpr-MPRA regulatory region 251 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17694 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12761 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17695 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:30310290-30311045 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:30311046-30311800 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:30316344-30316520 Neighboring gene apoptotic BCL2L1-antisense long non-coding RNA Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17698 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17699 Neighboring gene TPX2 microtubule nucleation factor Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:30373423-30373922 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:30376059-30376558

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187573.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL117381, AL160175

  2. NR_187574.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL117381, AL160175

  3. NR_187575.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL117381, AL160175

  4. NR_187576.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL117381, AL160175

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    31675108..31716844
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    33399365..33441456
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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