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LOC105373020 uncharacterized LOC105373020 [ Homo sapiens (human) ]

Gene ID: 105373020, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105373020
Gene description
uncharacterized LOC105373020
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in brain (RPKM 5.7), endometrium (RPKM 3.4) and 24 other tissues See more
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Genomic context

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See LOC105373020 in Genome Data Viewer
Location:
22q12.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (36496025..36497999)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (36956343..36958173)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905111 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:36847553-36848057 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:36848058-36848561 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:36851001-36851651 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:36851652-36852301 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:36857497-36858029 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:36865950-36866786 Neighboring gene thioredoxin 2 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:36878117-36879063 Neighboring gene FAD dependent oxidoreductase domain containing 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13670 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18936 Neighboring gene eukaryotic translation initiation factor 3 subunit D Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18937 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18938 Neighboring gene HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    36496025..36497999
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_938226.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    36956343..36958173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090643.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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