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LOC105373198 uncharacterized LOC105373198 [ Homo sapiens (human) ]

Gene ID: 105373198, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105373198
Gene description
uncharacterized LOC105373198
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105373198 in Genome Data Viewer
Location:
1q42.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (232374578..232378110, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (231760276..231763806, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101929902 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:232467930-232468910 Neighboring gene uncharacterized LOC105373196 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:232515217-232515718 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_5949 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_5966 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_5991 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_6018 Neighboring gene signal induced proliferation associated 1 like 2 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_6114 Neighboring gene NANOG hESC enhancer GRCh37_chr1:232603849-232604410 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_6136 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_6156 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:232614076-232614278 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:232684300-232684923 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:232686883-232687411 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:232687412-232687939 Neighboring gene Sharpr-MPRA regulatory region 1023 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:232691629-232692200 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:232726700-232727200 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1957 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1958 Neighboring gene uncharacterized LOC124904551

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    232374578..232378110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_949274.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    231760276..231763806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071190.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials