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LOC105373239 uncharacterized LOC105373239 [ Homo sapiens (human) ]

Gene ID: 105373239, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105373239
Gene description
uncharacterized LOC105373239
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lymph node (RPKM 1.4), appendix (RPKM 0.6) and 7 other tissues See more
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Genomic context

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Location:
Xq11.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (64842760..64851049)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (63268043..63276332)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene BLOC1S2 pseudogene 1 Neighboring gene uncharacterized LOC124905195 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:64195850-64196393 Neighboring gene zinc finger C4H2-type containing Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20879 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20880 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29712 Neighboring gene zinc finger CCCH-type containing 12B Neighboring gene ReSE screen-validated silencer GRCh37_chrX:64394379-64394544 Neighboring gene karyopherin subunit alpha 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    64842760..64851049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_938417.1 RNA Sequence

  2. XR_007068259.1 RNA Sequence

  3. XR_007068258.1 RNA Sequence

  4. XR_938418.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    63268043..63276332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007091035.1 RNA Sequence

  2. XR_007091038.1 RNA Sequence

  3. XR_007091037.1 RNA Sequence

  4. XR_007091036.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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