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LOC105373298 uncharacterized LOC105373298 [ Homo sapiens (human) ]

Gene ID: 105373298, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105373298
Gene description
uncharacterized LOC105373298
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105373298 in Genome Data Viewer
Location:
Xq22.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (100604970..100622156, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (99047400..99064586, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chrX:99551001-99551552 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chrX:99551553-99552102 Neighboring gene protocadherin 19 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:99606908-99607128 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:99650039-99650643 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chrX:99657381-99658580 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:99690569-99691186 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:99749275-99749776 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:99749777-99750276 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20914 Neighboring gene tenomodulin Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:99890767-99891382 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:99891383-99891998 Neighboring gene Sharpr-MPRA regulatory region 6756 Neighboring gene Sharpr-MPRA regulatory region 14263 Neighboring gene tetraspanin 6 Neighboring gene sushi repeat containing protein X-linked 2 Neighboring gene synaptotagmin like 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    100604970..100622156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_938469.2 RNA Sequence

  2. XR_938470.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    99047400..99064586 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090952.1 RNA Sequence

  2. XR_007090951.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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