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LOC105373346 uncharacterized LOC105373346 [ Homo sapiens (human) ]

Gene ID: 105373346, updated on 22-Oct-2024

Summary

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Gene symbol
LOC105373346
Gene description
uncharacterized LOC105373346
See related
Ensembl:ENSG00000235779
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.5) See more
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Genomic context

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See LOC105373346 in Genome Data Viewer
Location:
2p25.3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (290941..314375, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (291198..313210, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (290941..314375, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15215 Neighboring gene acid phosphatase 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:284666-285865 Neighboring gene uncharacterized LOC101927262 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11100 Neighboring gene ALK and LTK ligand 2 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:309367-310259 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:314675-315244 Neighboring gene long intergenic non-protein coding RNA 1865 Neighboring gene uncharacterized LOC105373351 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:373572-374771

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Clone Names

  • AC079779.5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_189069.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779
    Related
    ENST00000589124.6

  2. NR_189070.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  3. NR_189071.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  4. NR_189072.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  5. NR_189073.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  6. NR_189074.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  7. NR_189075.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779
    Related
    ENST00000775970.1

  8. NR_189076.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  9. NR_189077.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  10. NR_189078.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  11. NR_189079.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779
    Related
    ENST00000654297.1

  12. NR_189080.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  13. NR_189081.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  14. NR_189082.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  15. NR_189083.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  16. NR_189084.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  17. NR_189085.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  18. NR_189086.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  19. NR_189087.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  20. NR_189088.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  21. NR_189089.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  22. NR_189090.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  23. NR_189091.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  24. NR_189092.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  25. NR_189093.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

  26. NR_189094.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079779

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    290941..314375 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    291198..313210 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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