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LOC105373458 uncharacterized LOC105373458 [ Homo sapiens (human) ]

Gene ID: 105373458, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105373458
Gene description
uncharacterized LOC105373458
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105373458 in Genome Data Viewer
Location:
2p24.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (19429993..19436507, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (19462808..19469321, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907738 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:19384517-19385018 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:19385019-19385518 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:19404229-19404728 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:19428093-19429292 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:19505267-19505860 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:19505861-19506454 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15361 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15362 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15363 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15364 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:19555132-19556097 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:19556098-19557062 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:19557728-19558256 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:19563065-19563866 Neighboring gene Sharpr-MPRA regulatory region 3817 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:19580130-19581329 Neighboring gene microRNA 4757 Neighboring gene odd-skipped related transcription factor 1 Neighboring gene uncharacterized LOC101928196 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:19687399-19688598 Neighboring gene long intergenic non-protein coding RNA 1808 Neighboring gene VISTA enhancer hs1273 Neighboring gene uncharacterized LOC105373459

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    19429993..19436507 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_939778.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    19462808..19469321 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071858.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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