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LOC105373714 uncharacterized LOC105373714 [ Homo sapiens (human) ]

Gene ID: 105373714, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105373714
Gene description
uncharacterized LOC105373714
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105373714 in Genome Data Viewer
Location:
2q24.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (157876584..157918374)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (158329615..158375355)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907898 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:158590437-158591636 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:158605968-158606478 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:158606479-158606988 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:158608073-158608572 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:158616153-158616973 Neighboring gene NANOG hESC enhancer GRCh37_chr2:158617891-158618482 Neighboring gene activin A receptor type 1 Neighboring gene NANOG hESC enhancer GRCh37_chr2:158687547-158688048 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:158694657-158695856 Neighboring gene uncharacterized LOC124907899 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12030 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12031 Neighboring gene Sharpr-MPRA regulatory region 13798 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12034 Neighboring gene RNA, U6 small nuclear 436, pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:158789161-158789872 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:158789873-158790582 Neighboring gene MTA3 pseudogene 1 Neighboring gene RNA, U6 small nuclear 932, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    157876584..157918374
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_923517.3 RNA Sequence

  2. XR_923518.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    158329615..158375355
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072592.1 RNA Sequence

  2. XR_007072591.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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