U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

EPCART ERG-positive prostate cancer associated androgen responsive transcript [ Homo sapiens (human) ]

Gene ID: 105373767, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
EPCARTprovided by HGNC
Official Full Name
ERG-positive prostate cancer associated androgen responsive transcriptprovided by HGNC
Primary source
HGNC:HGNC:51792
See related
AllianceGenome:HGNC:51792
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PRCAT122
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
2q31.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (180117350..180125219, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (180599194..180608555, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA43 Neighboring gene CWC22 spliceosome associated protein homolog Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:180871172-180871704 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:180898515-180899015 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:180921213-180921999 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:180936454-180937019 Neighboring gene uncharacterized LOC105373768 Neighboring gene uncharacterized LOC105373769 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:181293207-181293431

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Transcriptomic heterogeneity in multifocal prostate cancer. Salami SS, et al. JCI Insight, 2018 Nov 2. PMID 30385730, Free PMC Article
  2. [D-Pen2,L-Pen5]enkephalin induced analgesia in the jimpy mouse: in vivo evidence for delta-receptor mediated analgesia. Mathiasen JR, et al. Eur J Pharmacol, 1987 Apr 29. PMID 3038573
  3. Transcriptome Sequencing Reveals PCAT5 as a Novel ERG-Regulated Long Noncoding RNA in Prostate Cancer. Ylipää A, et al. Cancer Res, 2015 Oct 1. PMID 26282172
  4. The landscape of long noncoding RNAs in the human transcriptome. Iyer MK, et al. Nat Genet, 2015 Mar. PMID 25599403, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

Go to the top of the page Help

Other Names

  • ERG-positive PC-associated androgen responsive transcript
  • PCAT-2-180961
  • TPCAT-2-180961
  • Tampere prostate cancer-associated transcript-2-180961

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    180117350..180125219 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_923634.3 RNA Sequence

  2. XR_001739226.1 RNA Sequence

  3. XR_001739225.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    180599194..180608555 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072699.1 RNA Sequence

  2. XR_007072698.1 RNA Sequence

  3. XR_007072697.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases