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LOC105374413 uncharacterized LOC105374413 [ Homo sapiens (human) ]

Gene ID: 105374413, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105374413
Gene description
uncharacterized LOC105374413
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in spleen (RPKM 2.3), lymph node (RPKM 0.6) and 13 other tissues See more
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Genomic context

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See LOC105374413 in Genome Data Viewer
Location:
4p14
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (38744122..38753051)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (38713649..38725529)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2278 Neighboring gene KLF3-I enhancer Neighboring gene KLF3 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:38623749-38624601 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_79844 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_79852 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_79860 Neighboring gene KLF3-II enhancer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15359 Neighboring gene KLF3 promoter region Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15362 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:38668044-38668894 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:38668895-38669744 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:38671391-38671960 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:38674239-38674808 Neighboring gene KLF3-IIII enhancer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15363 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_79886 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_79904 Neighboring gene KLF transcription factor 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21441 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21442 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21443 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21444 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21445 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21446 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21447 Neighboring gene RNA, 5S ribosomal pseudogene 158 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_79942 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21448 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_79947 Neighboring gene toll like receptor 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    38744122..38753051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_925231.2 RNA Sequence

  2. XR_925228.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    38713649..38725529
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074587.1 RNA Sequence

  2. XR_007074588.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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