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LINC01805 long intergenic non-protein coding RNA 1805 [ Homo sapiens (human) ]

Gene ID: 105374774, updated on 17-Sep-2024

Summary

Official Symbol
LINC01805provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1805provided by HGNC
Primary source
HGNC:HGNC:52597
See related
Ensembl:ENSG00000223863 AllianceGenome:HGNC:52597
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in skin (RPKM 1.6), prostate (RPKM 0.9) and 1 other tissue See more
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Genomic context

See LINC01805 in Genome Data Viewer
Location:
2p14
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (64486353..64500904)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (64495570..64510112)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (64713487..64728038)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene LGALSL divergent transcript Neighboring gene uncharacterized LOC124907775 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11552 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11553 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11554 Neighboring gene galectin like Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:64711199-64712398 Neighboring gene Sharpr-MPRA regulatory region 8770 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15893 Neighboring gene H3K27ac hESC enhancers GRCh37_chr2:64751340-64751840 and GRCh37_chr2:64751841-64752341 Neighboring gene AFTPH divergent transcript Neighboring gene microRNA 4434 Neighboring gene aftiphilin

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147011.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008074
    Related
    ENST00000436433.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    64486353..64500904
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    64495570..64510112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)