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LOC105374811 uncharacterized LOC105374811 [ Homo sapiens (human) ]

Gene ID: 105374811, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105374811
Gene description
uncharacterized LOC105374811
See related
Ensembl:ENSG00000270571
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in placenta (RPKM 1.2), urinary bladder (RPKM 1.2) and 19 other tissues See more
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Genomic context

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See LOC105374811 in Genome Data Viewer
Location:
2p12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (75154318..75279807)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (75163181..75289076)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (75381444..75506933)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907850 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11678 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11679 Neighboring gene tachykinin receptor 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:75319672-75319876 Neighboring gene microRNA 5000 Neighboring gene NANOG hESC enhancer GRCh37_chr2:75440885-75441885 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:75444277-75444776 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:75444809-75444984 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:75446173-75446920 Neighboring gene uncharacterized LOC107985900 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16084 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16085 Neighboring gene uncharacterized LOC105374810 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:75608329-75608829 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16086 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16087 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16088 Neighboring gene small nucleolar RNA U13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Preliminary RNA-Seq Analysis of Long Non-Coding RNAs Expressed in Human Term Placenta. Majewska M, et al. Int J Mol Sci, 2018 Jun 27. PMID 29954144, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_168009.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007380, AC007681

  2. NR_168010.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007380, AC007681

  3. NR_168011.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007681
    Related
    ENST00000604271.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    75154318..75279807
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    75163181..75289076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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