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MALLP2 MALL pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 105374855, updated on 17-Sep-2024

Summary

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Official Symbol
MALLP2provided by HGNC
Official Full Name
MALL pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:55039
See related
AllianceGenome:HGNC:55039
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lymph node (RPKM 1.2), esophagus (RPKM 0.7) and 9 other tissues See more
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Genomic context

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See MALLP2 in Genome Data Viewer
Location:
2p11.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (88810151..88818429, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (88819156..88827434, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (89109665..89117943, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ribose 5-phosphate isomerase A Neighboring gene uncharacterized LOC105374853 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16175 Neighboring gene Sharpr-MPRA regulatory region 15514 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:89064099-89064600 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11734 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11735 Neighboring gene ankyrin repeat domain 36B pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 6437 Neighboring gene microRNA 4436a Neighboring gene uncharacterized LOC105374854 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16176 Neighboring gene immunoglobulin kappa deleting element or like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • mal, T cell differentiation protein like pseudogene

Clone Names

  • AC096579.13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187233.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC244205

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    88810151..88818429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    88819156..88827434 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_030303.1: Suppressed sequence

    Description
    NG_030303.1: This RefSeq was removed because there is sufficient evidence that this locus is transcribed.
Nucleotide Protein
Heading Accession and Version

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