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LOC105375035 uncharacterized LOC105375035 [ Homo sapiens (human) ]

Gene ID: 105375035, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105375035
Gene description
uncharacterized LOC105375035
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 5.6) and bone marrow (RPKM 0.6) See more
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Genomic context

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See LOC105375035 in Genome Data Viewer
Location:
6p21.31
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (35968871..35992581)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (35789183..35812885)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17101 Neighboring gene LHFPL tetraspan subfamily member 5 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:35810876-35811031 Neighboring gene uncharacterized LOC124901311 Neighboring gene SRSF protein kinase 1 Neighboring gene MPRA-validated peak5780 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17102 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17103 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:35899139-35899789 Neighboring gene solute carrier family 26 member 8 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:35960877-35961390 Neighboring gene uncharacterized LOC105375034 Neighboring gene divergent-paired related homeobox pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:35991863-35992364 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:35992365-35992864 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24415 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17104 Neighboring gene Sharpr-MPRA regulatory region 2026 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17105 Neighboring gene mitogen-activated protein kinase 14 Neighboring gene NUDT5 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    35968871..35992581
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_926747.3 RNA Sequence

  2. XR_926748.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    35789183..35812885
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076737.1 RNA Sequence

  2. XR_007076738.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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