U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC105375131 uncharacterized LOC105375131 [ Homo sapiens (human) ]

Gene ID: 105375131, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC105375131
Gene description
uncharacterized LOC105375131
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
7p22.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (4127612..4134837, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (4244351..4251605, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (4167244..4174469, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene sidekick cell adhesion molecule 1 Neighboring gene NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:3723703-3724203 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr7:3752169-3752670 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr7:3752671-3753170 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:3761680-3762223 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:3762224-3762766 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:3827296-3827796 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:3950537-3951736 Neighboring gene uncharacterized LOC124901576 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:4007911-4009110 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:4079787-4080423 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:4080424-4081059 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4082400-4082925 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:4118749-4118965 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4128978-4129522 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4142403-4142903 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4145852-4146434 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4147017-4147598 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4148767-4149268 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4175261-4176143 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4176144-4177025 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4186737-4187351 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4208580-4209080 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:4214126-4214549 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4220886-4221386 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4221387-4221887 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4226243-4226988 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4229670-4230550 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4234799-4235418 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4237901-4238400 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4242006-4242522 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4242523-4243039 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4245621-4246120 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4245119-4245620 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4256703-4257426 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4265444-4265945 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4265946-4266446 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4276819-4277320 Neighboring gene NANOG hESC enhancer GRCh37_chr7:4279685-4280186 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:4299431-4300630 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:4303312-4304511 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr7:4347010-4347752 Neighboring gene uncharacterized LOC124901578 Neighboring gene uncharacterized LOC124901579

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_158215.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC017000

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    4127612..4134837 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    4244351..4251605 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases