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SDK1-AS1 SDK1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105375132, updated on 10-Oct-2023

Summary

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Official Symbol
SDK1-AS1provided by HGNC
Official Full Name
SDK1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40883
See related
AllianceGenome:HGNC:40883
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
7p22.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (3243547..3352085, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (3357803..3416685, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901574 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:3234434-3235114 Neighboring gene uncharacterized LOC124901575 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:3283525-3284724 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:3320540-3321077 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:3339451-3339963 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:3339964-3340475 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:3341185-3341685 Neighboring gene ribosomal protein L21 pseudogene 72 Neighboring gene uncharacterized LOC124901577 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:3439188-3439937 Neighboring gene sidekick cell adhesion molecule 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:3492607-3493001 Neighboring gene NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AC073316.1, AC073316.3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    3243547..3352085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001744897.3 RNA Sequence

  2. XR_001744898.3 RNA Sequence

  3. XR_007060194.1 RNA Sequence

  4. XR_926997.4 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    3357803..3416685 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078231.1 RNA Sequence

  2. XR_007078228.1 RNA Sequence

  3. XR_007078229.1 RNA Sequence

  4. XR_007078230.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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