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LOC105375171 uncharacterized LOC105375171 [ Homo sapiens (human) ]

Gene ID: 105375171, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105375171
Gene description
uncharacterized LOC105375171
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105375171 in Genome Data Viewer
Location:
7p21.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (17362433..17371846, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (17492177..17501592, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986772 Neighboring gene uncharacterized LOC101927609 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25671 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25672 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:17273731-17274930 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17985 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17984 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17983 Neighboring gene aryl hydrocarbon receptor Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:17411084-17412283 Neighboring gene long intergenic non-protein coding RNA 2888 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:17445039-17446238 Neighboring gene uncharacterized LOC105375172 Neighboring gene long intergenic non-protein coding RNA 2889 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17986 Neighboring gene Sharpr-MPRA regulatory region 7324

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    17362433..17371846 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_927074.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    17492177..17501592 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078293.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials