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LINC00972 long intergenic non-protein coding RNA 972 [ Homo sapiens (human) ]

Gene ID: 105375380, updated on 10-Oct-2023

Summary

Official Symbol
LINC00972provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 972provided by HGNC
Primary source
HGNC:HGNC:48826
See related
Ensembl:ENSG00000225128 AllianceGenome:HGNC:48826
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

Location:
7q21.11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (85421122..85489338)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (86671022..86739254)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (85050438..85118654)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene heat shock protein family A (Hsp70) member 8 pseudogene 16 Neighboring gene semaphorin 3D Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18338 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:85053215-85054073 Neighboring gene dynein light chain LC8-type 1 pseudogene 7 Neighboring gene NANOG hESC enhancer GRCh37_chr7:85260046-85260587 Neighboring gene NANOG hESC enhancer GRCh37_chr7:85315988-85316510 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26220 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:85557785-85558332 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:85958016-85958801 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:85969252-85969876 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:85969877-85970501 Neighboring gene suppressor of cytokine signaling 5 pseudogene 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:86176787-86177986 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26221 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26222 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:86337538-86338062 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:86389511-86390085 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26223 Neighboring gene glutamate metabotropic receptor 3 Neighboring gene GRM3 antisense RNA 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134240.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC073958, AC074112
    Related
    ENST00000438065.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    85421122..85489338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    86671022..86739254
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)