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PPP1R9A-AS1 PPP1R9A antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105375405, updated on 10-Oct-2023

Summary

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Official Symbol
PPP1R9A-AS1provided by HGNC
Official Full Name
PPP1R9A antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40696
See related
Ensembl:ENSG00000236197 AllianceGenome:HGNC:40696
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See PPP1R9A-AS1 in Genome Data Viewer
Location:
7q21.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (95035692..95214332, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (96271525..96450204, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ADP ribosylation factor 1 pseudogene 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:94506840-94508039 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:94536963-94537723 Neighboring gene protein phosphatase 1 regulatory subunit 9A Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:94598410-94599252 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:94655897-94656396 Neighboring gene histidine triad nucleotide binding protein 1 pseudogene 2 Neighboring gene RNA, U4 small nuclear 16, pseudogene Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:94897970-94899169 Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18382 Neighboring gene paraoxonase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • AC002429.5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183323.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC002429, AC073890

  2. NR_183324.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC002429, AC073890

  3. NR_183325.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC002429, AC073890

  4. NR_183326.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC002429, AC073890
    Related
    ENST00000417881.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    95035692..95214332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    96271525..96450204 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases