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LINC03060 long intergenic non-protein coding RNA 3060 [ Homo sapiens (human) ]

Gene ID: 105375519, updated on 10-Oct-2023

Summary

Official Symbol
LINC03060provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3060provided by HGNC
Primary source
HGNC:HGNC:56367
See related
Ensembl:ENSG00000273297
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC03060 in Genome Data Viewer
Location:
7q33
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (134415566..134432420, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (135723630..135740458, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18671 Neighboring gene solute carrier family 35 member B4 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18672 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26689 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:134050229-134051428 Neighboring gene uncharacterized LOC105375518 Neighboring gene uncharacterized LOC105375517 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:134132907-134134106 Neighboring gene aldo-keto reductase family 1 member B Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18673 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:134147917-134148417 Neighboring gene endogenous retrovirus group 3 member 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183388.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009275, AC078847
    Related
    ENST00000609619.2
  2. NR_183389.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009275, AC078847
    Related
    ENST00000660417.1
  3. NR_183390.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009275, AC078847
    Related
    ENST00000665229.1
  4. NR_183391.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009275, AC078847
    Related
    ENST00000657533.1
  5. NR_183392.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009275, AC078847
    Related
    ENST00000656398.1
  6. NR_183393.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009275, AC078847
    Related
    ENST00000660944.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    134415566..134432420 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    135723630..135740458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)