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LINC01022 long intergenic non-protein coding RNA 1022 [ Homo sapiens (human) ]

Gene ID: 105375616, updated on 10-Oct-2023

Summary

Official Symbol
LINC01022provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1022provided by HGNC
Primary source
HGNC:HGNC:48998
See related
AllianceGenome:HGNC:48998
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
7q36.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (158590629..158591933)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (159799990..159801294)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (158383321..158384625)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type N2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:158330775-158331759 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:158342742-158343550 Neighboring gene MPRA-validated peak6883 silencer Neighboring gene uncharacterized LOC124901793 Neighboring gene Sharpr-MPRA regulatory region 10119 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:158389617-158390116 Neighboring gene microRNA 595 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:158456637-158457836 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:158455857-158456356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:158455355-158455856 Neighboring gene microRNA 5707 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:158496256-158496834 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18866 Neighboring gene THAP domain containing 5 pseudogene 1 Neighboring gene non-SMC condensin II complex subunit G2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132379.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA993709, AC093662, DB337926, DB518621

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    158590629..158591933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    159799990..159801294
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)