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LOC105375653 uncharacterized LOC105375653 [ Homo sapiens (human) ]

Gene ID: 105375653, updated on 22-Oct-2024

Summary

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Gene symbol
LOC105375653
Gene description
uncharacterized LOC105375653
See related
Ensembl:ENSG00000302579
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105375653 in Genome Data Viewer
Location:
8q22.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (96419774..96459420)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (97545471..97585139)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375652 Neighboring gene Sharpr-MPRA regulatory region 10382 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27662 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27663 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27664 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr8:97339509-97340044 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr8:97340045-97340580 Neighboring gene phosphatidylserine synthase 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:97351756-97352256 Neighboring gene uncharacterized LOC102724804 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:97388962-97389724 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27665 Neighboring gene RNA, U6 small nuclear 1172, pseudogene Neighboring gene Sharpr-MPRA regulatory region 5310 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:97532917-97533417 Neighboring gene uncharacterized LOC124900253 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:97563257-97563757 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:97592183-97592688 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:97601754-97602254 Neighboring gene syndecan 2 Neighboring gene Sharpr-MPRA regulatory region 4348 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19389 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:97731641-97732141 Neighboring gene carboxypeptidase Q Neighboring gene uncharacterized LOC124901985

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    96419774..96459420
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_928432.2 RNA Sequence

    Related
    ENST00000787941.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    97545471..97585139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079264.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials