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LOC105375782 uncharacterized LOC105375782 [ Homo sapiens (human) ]

Gene ID: 105375782, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105375782
Gene description
uncharacterized LOC105375782
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.2) See more
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Genomic context

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See LOC105375782 in Genome Data Viewer
Location:
8q24.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (140464871..140466939)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (141585035..141586558)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex subunit 9 Neighboring gene uncharacterized LOC124902029 Neighboring gene MPRA-validated peak7188 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:141274731-141275554 Neighboring gene uncharacterized LOC105375779 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:141282982-141283482 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:141309152-141309652 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:141309653-141310153 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:141312322-141312822 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:141312823-141313323 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:141319328-141320527 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:141320544-141321044 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:141321045-141321545 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:141341524-141342398 Neighboring gene Sharpr-MPRA regulatory region 993 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:141355797-141356018 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19574 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:141375096-141375596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:141375597-141376097 Neighboring gene Sharpr-MPRA regulatory region 8823 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:141458229-141458802 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:141458803-141459375 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19575 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19576 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:141468097-141468615 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:141474198-141475397 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19579 Neighboring gene MPRA-validated peak7190 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr8:141518766-141518946 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28027 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28028 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19580 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28029 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:141537549-141538050 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:141538051-141538550 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:141554768-141555545 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:141559982-141560482 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:141569579-141570778 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:141567119-141568318 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:141578119-141578876 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28030 Neighboring gene chromatin accessibility complex subunit 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28031 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28032 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:141603574-141604074 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28034 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:141607590-141608092 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28036 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28037 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:141619067-141620038 Neighboring gene MAGE-like protein 2 Neighboring gene argonaute RISC catalytic component 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:141634221-141635220 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:141635221-141636221

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    140464871..140466939
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_928707.3 RNA Sequence

  2. XR_001746120.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    141585035..141586558
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079465.1 RNA Sequence

  2. XR_007079466.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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