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LOC105376020 uncharacterized LOC105376020 [ Homo sapiens (human) ]

Gene ID: 105376020, updated on 22-Oct-2024

Summary

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Gene symbol
LOC105376020
Gene description
uncharacterized LOC105376020
See related
Ensembl:ENSG00000286322
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in fat (RPKM 16.7), heart (RPKM 3.7) and 1 other tissue See more
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Genomic context

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See LOC105376020 in Genome Data Viewer
Location:
9p13.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (33401521..33410550)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (33420124..33429149)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (33401519..33410548)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor, X-box binding 1 Neighboring gene uncharacterized LOC105376018 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:33372618-33373118 Neighboring gene uncharacterized LOC124902142 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:33380602-33381202 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:33381203-33381801 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:33383370-33383870 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:33383871-33384371 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:33385863-33387062 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:33390288-33391075 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:33391076-33391862 Neighboring gene Sharpr-MPRA regulatory region 4081 Neighboring gene aquaporin 7 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:33404334-33404891 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:33407721-33408222 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:33408223-33408722 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:33414572-33415103 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:33415104-33415634 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:33435285-33435786 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:33438678-33438916 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:33442744-33443943 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19834 Neighboring gene Sharpr-MPRA regulatory region 5008 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:33458152-33459351 Neighboring gene aquaporin 3 (Gill blood group) Neighboring gene microRNA 6851 Neighboring gene nucleolar protein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188536.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356218
    Related
    ENST00000690698.2

  2. NR_188537.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356218
    Related
    ENST00000661480.2

  3. NR_188538.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356218
    Related
    ENST00000653159.2

  4. NR_188539.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356218
    Related
    ENST00000808032.1

  5. NR_188540.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356218
    Related
    ENST00000657938.2

  6. NR_188541.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356218
    Related
    ENST00000664487.1

  7. NR_188542.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356218
    Related
    ENST00000664119.1

  8. NR_188543.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356218
    Related
    ENST00000654973.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    33401521..33410550
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    33420124..33429149
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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