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LOC105376270 uncharacterized LOC105376270 [ Homo sapiens (human) ]

Gene ID: 105376270, updated on 17-Sep-2024

Summary

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Gene symbol
LOC105376270
Gene description
uncharacterized LOC105376270
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in skin (RPKM 1.0), adrenal (RPKM 0.7) and 2 other tissues See more
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Genomic context

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See LOC105376270 in Genome Data Viewer
Location:
9q33.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (124438908..124453651, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (136636933..136651882, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100129034 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_106555 Neighboring gene uncharacterized LOC124902267 Neighboring gene proteasome 20S subunit beta 7 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:127162229-127162772 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:127162773-127163315 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:127173920-127175119 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28985 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:127202115-127202615 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:127212355-127212879 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:127212880-127213404 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:127213405-127213929 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:127244219-127244996 Neighboring gene adhesion G protein-coupled receptor D2 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:127248727-127248904 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20263 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:127263337-127263838 Neighboring gene NR5A1 5' promoter region Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:127274335-127274887 Neighboring gene nuclear receptor subfamily 5 group A member 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:127297992-127298492 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28986 Neighboring gene nuclear receptor subfamily 6 group A member 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:127336756-127337955 Neighboring gene RAN binding protein 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    124438908..124453651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007061771.1 RNA Sequence

  2. XR_007061770.1 RNA Sequence

  3. XR_007061767.1 RNA Sequence

  4. XR_007061766.1 RNA Sequence

  5. XR_007061768.1 RNA Sequence

  6. XR_007061769.1 RNA Sequence

  7. XR_930343.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    136636933..136651882 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080000.1 RNA Sequence

  2. XR_007079999.1 RNA Sequence

  3. XR_007079997.1 RNA Sequence

  4. XR_007079998.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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