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LINC02678 long intergenic non-protein coding RNA 2678 [ Homo sapiens (human) ]

Gene ID: 105376383, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02678provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2678provided by HGNC
Primary source
HGNC:HGNC:54172
See related
AllianceGenome:HGNC:54172
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
10p15.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (5607604..5610665, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (5611354..5614415, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376381 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:5605907-5606133 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_13268 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:5616073-5616688 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:5625367-5625895 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:5626502-5627701 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:5629384-5630191 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_13345 Neighboring gene Sharpr-MPRA regulatory region 6566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:5638569-5639441 Neighboring gene lncRNA associated with SART3 regulation of splicing Neighboring gene long intergenic non-protein coding RNA 2677 Neighboring gene uncharacterized LOC107984199 Neighboring gene RNA, 7SL, cytoplasmic 445, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    5607604..5610665 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001747275.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    5611354..5614415 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080931.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases