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LINC02644 long intergenic non-protein coding RNA 2644 [ Homo sapiens (human) ]

Gene ID: 105376480, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02644provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2644provided by HGNC
Primary source
HGNC:HGNC:54127
See related
Ensembl:ENSG00000230720 AllianceGenome:HGNC:54127
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02644 in Genome Data Viewer
Location:
10p11.23
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (30723219..30723740)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (30754479..30755007)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (31012148..31012669)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902404 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:30932862-30933433 Neighboring gene lysozyme like 2 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:30950154-30951353 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:30970851-30972050 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:30972911-30973410 Neighboring gene NANOG hESC enhancer GRCh37_chr10:30976431-30976969 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:30984558-30985757 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3221 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3222 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3223 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:30994171-30994694 Neighboring gene supervillin family member 2, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3225 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3226 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3227 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3228 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2268 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2269 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:31072075-31072575 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2270 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:31106665-31107586 Neighboring gene uncharacterized LOC124902405 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:31135691-31136191 Neighboring gene zinc finger protein 438 Neighboring gene DEAD-box helicase 10 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134497.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX114033
    Related
    ENST00000416310.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    30723219..30723740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    30754479..30755007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases