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LINC02628 long intergenic non-protein coding RNA 2628 [ Homo sapiens (human) ]

Gene ID: 105376490, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02628provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2628provided by HGNC
Primary source
HGNC:HGNC:54107
See related
AllianceGenome:HGNC:54107
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
10p11.22
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (33579012..33601030, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (33607807..33629782, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene neuropilin 1 Neighboring gene RNA, 7SL, cytoplasmic 398, pseudogene Neighboring gene Sharpr-MPRA regulatory region 15712 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:33682030-33682530 Neighboring gene NANOG hESC enhancer GRCh37_chr10:33773681-33774220 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:33804933-33805524 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:33808102-33808943 Neighboring gene uncharacterized LOC105376489 Neighboring gene NANOG hESC enhancer GRCh37_chr10:33855273-33855774 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:33950959-33951459 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:33979034-33980233 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:33993045-33994244 Neighboring gene uncharacterized LOC124902408 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:34061547-34062270 Neighboring gene long intergenic non-protein coding RNA 838

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_187516.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC018980

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    33579012..33601030 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    33607807..33629782 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases