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LOC105376526 uncharacterized LOC105376526 [ Homo sapiens (human) ]

Gene ID: 105376526, updated on 13-Mar-2024

Summary

Gene symbol
LOC105376526
Gene description
uncharacterized LOC105376526
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in thyroid (RPKM 9.4), lung (RPKM 2.7) and 12 other tissues See more
Orthologs
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Genomic context

See LOC105376526 in Genome Data Viewer
Location:
11p15.4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (3473571..3477073, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (3519032..3522534, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (3494801..3498303, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene tumor suppressing subtransferable candidate 2 (pseudogene) Neighboring gene Sharpr-MPRA regulatory region 4578 Neighboring gene olfactory receptor family 7 subfamily E member 12 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:3425235-3426069 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:3426070-3426903 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:3427261-3427774 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:3427775-3428286 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:3430516-3431016 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:3431017-3431517 Neighboring gene family with sequence similarity 86, member A pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3077 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3078 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3079 Neighboring gene MPRA-validated peak1172 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:3456375-3456993 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:3458797-3458965 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 15 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:3480157-3480658 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:3480659-3481158 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:3510409-3510910 Neighboring gene uncharacterized LOC101927708 Neighboring gene uncharacterized LOC107984301 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:3533122-3533622 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:3533623-3534123 Neighboring gene small nuclear ribonucleoprotein polypeptide C pseudogene 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_169525.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AC127526

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    3473571..3477073 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    3519032..3522534 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)